Well, I think it was evident from last nights episode of Agents of Shield that Secret Warriors is coming to the MCU and that Skye/Daisy/Quake is going to be leading it. As of now, she is the only powered agent, but I think in Season 3, we will be seeing more join the ranks. Who? Maybe new characters that have not been a part of the comics. Lincoln? Perhaps!
Season 3 looks like it is going to be even more exciting than ever. If you haven't been watching Agents of Shield, you missed an exciting episode last night. It was worthy of everything Marvel.
As of now, I'm convinced that the Inhumans are here to stay and are going to be a major part of AoS and the MCU going forward.